PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT15G09740
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT12G09850	No description available.	Chr12	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G50470	nuclear factor Y, subunit C7 'nuclear factor Y, subunit C7' (NF-YC7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C6 (TAIR:AT5G50480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	-	View
AT5G63470	nuclear factor Y, subunit C4 'nuclear factor Y, subunit C4' (NF-YC4); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C1 (TAIR:AT3G48590.1); Has 1376 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 353; Plants - 441; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).	5	-	View
AT3G48590	nuclear factor Y, subunit C1 'nuclear factor Y, subunit C1' (NF-YC1); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C4 (TAIR:AT5G63470.2); Has 1348 Blast hits to 1348 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 449; Fungi - 353; Plants - 430; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.	3	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00013G00980	No description available.	supercontig_13	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA10G12000	CC_gene:Nfyc,CC_gene:NFYC6,CC_gene:NFYC9,CC_gene:NFYC2,CC_gene:NFYC3,CC_gene:NFYC1,CC_gene:NFYC4,CC_functional_completeness:fragment,PRODUCT:Nuclear transcription factor Y subunit C-4,GO:0043565,GO:0005622,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:2.7.7.7	chr10	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G111450	Nuclear transcription factor Y subunit C-2 (AHRD V1 -- B4FWZ1_MAIZE)%3B contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone	ch03	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV17G08370	name=GSVIVG01008570001;	chr17	-	View