PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: MA08G13500
Organism: Musa acuminata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
MA11G01140	CC_gene:Rpn3,CC_gene:Psmd3,CC_gene:PSMD3,CC_gene:At1g75990,CC_gene:EMB2719,CC_gene:21D7,CC_functional_completeness:complete,PRODUCT:Probable 26S proteasome non-ATPase regulatory subunit 3,GO:0042176,GO:0030234,GO:0000502,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr11	-	View
MA05G19490	CC_gene:Psmd3,CC_gene:Rpn3,CC_gene:PSMD3,CC_gene:At1g75990,CC_gene:EMB2719,CC_gene:21D7,CC_functional_completeness:complete,PRODUCT:Probable 26S proteasome non-ATPase regulatory subunit 3,GO:0042176,GO:0030234,GO:0000502,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr5	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G75990	PAM domain (PCI/PINT associated module) protein PAM domain (PCI/PINT associated module) protein; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: PAM domain (PCI/PINT associated module) protein (TAIR:AT1G20200.1); Has 740 Blast hits to 739 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 146; Plants - 168; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).	1	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00020G01040	No description available.	supercontig_20	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT04G17660	No description available.	Chr04	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G111700	26S proteasome non-ATPase regulatory subunit 3 (AHRD V1 ***- B6TAE2_MAIZE)%3B contains Interpro domain(s) IPR013143 PCI/PINT associated module	ch01	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G04550	name=GSVIVG01024003001;	chr3	-	View