Anchorpoints

Gene id
MA06G10520
Organism
Musa acuminata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
MA10G25530CC_gene:CYCD2-3,CC_gene:CYCD2-1,CC_gene:CYCD2-2,CC_gene:CYCD4-2,CC_gene:CYCD3-1,CC_gene:CYCD4-1,CC_functional_completeness:complete,PRODUCT:Cyclin-D4-1,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View
MA02G22910CC_gene:CYCD2-3,CC_gene:CYCD2-1,CC_gene:CYCD4-2,CC_gene:CYCD2-2,CC_gene:CYCD4-1,CC_gene:CYCD3-1,CC_functional_completeness:complete,PRODUCT:Putative Cyclin-D3-1,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr2-View
MA09G15450CC_gene:CYCD2-3,CC_gene:CYCD2-1,CC_gene:CYCD2-2,CC_gene:CYCD4-2,CC_gene:CYCD4-1,CC_gene:CYCD3-1,CC_functional_completeness:complete,PRODUCT:Cyclin-D3-1,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr9-View
MA03G06820CC_gene:CYCD2-3,CC_gene:CYCD2-1,CC_gene:CYCD4-2,CC_gene:CYCD2-2,CC_gene:CYCD4-1,CC_gene:CYCD3-1,CC_functional_completeness:complete,PRODUCT:Cyclin-D3-1,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3-View
MA10G19680CC_gene:CYCD2-3,CC_gene:CYCD2-1,CC_gene:CYCD4-2,CC_gene:CYCD2-2,CC_gene:CYCD4-1,CC_gene:CYCD3-1,CC_functional_completeness:complete,PRODUCT:Cyclin-D3-1,GO:0005634,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G10440cyclin d4;2 (CYCD4;2); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2823 Blast hits to 2820 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1255; Fungi - 334; Plants - 962; Viruses - 9; Other Eukaryotes - 263 (source: NCBI BLink). Encodes a cyclin involved in cell proliferation during stomatal cell lineage development. cyclin d4;25-View
AT5G65420CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin d4;2 (TAIR:AT5G10440.1). CYCLIN D4;1 Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.5-View
AT2G22490Cyclin D2;1 encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A. Cyclin D2;1 (CYCD2;1); FUNCTIONS IN: protein binding, cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1).2-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G21230No description available.Bd1+View
BD4G32556No description available.Bd4+View
BD1G60647No description available.Bd1+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00055G00360No description available.supercontig_55-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G42860cyclin, putative, expressed Cyclin-D2-27-View
OS09G29100cyclin, putative, expressed Cyclin-D4-19+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_07G34920No description available.Chr07-View
OSINDICA_03G26050No description available.Chr03-View
OSINDICA_09G23310No description available.Chr09+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G10350No description available.Chr02-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB02G039550No description available.chr_2+View
SB01G033460No description available.chr_1+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G08770No description available.scaffold_4+View
SI002G40270No description available.scaffold_2+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL04G076040Cyclin d2 (AHRD V1 **** Q6T2Z7_SOYBN)%3B contains Interpro domain(s) IPR015451 Cyclin Dch04-View
SL11G010460Cyclin D2 (AHRD V1 ***- Q8L6U0_DAUCA)%3B contains Interpro domain(s) IPR015451 Cyclin Dch11-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G27460No description available.7+View


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Chromosome
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