PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT5G56210
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G26455	Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope. It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells. WPP domain interacting protein 1 (WIP1); FUNCTIONS IN: protein homodimerization activity, protein heterodimerization activity; LOCATED IN: nuclear envelope, cell plate; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: WPP domain interacting protein 2 (TAIR:AT5G56210.1); Has 450 Blast hits to 403 proteins in 126 species: Archae - 15; Bacteria - 85; Metazoa - 55; Fungi - 14; Plants - 89; Viruses - 10; Other Eukaryotes - 182 (source: NCBI BLink). WPP domain interacting protein 1	4	+	View
AT3G13360	WPP domain interacting protein 3 (WIP3); BEST Arabidopsis thaliana protein match is: WPP domain interacting protein 1 (TAIR:AT4G26455.1); Has 169 Blast hits to 165 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 21; Fungi - 13; Plants - 65; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). WPP domain interacting protein 3 Encodes an outer nuclear membrane protein that anchors RanGAP1 to the nuclear envelope. It interacts with SUN proteins and is required for maintaining the elongated nuclear shape of epidermal cells.	3	-	View

Orthologs (inter-species colinear regions)

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00012G00680	No description available.	supercontig_12	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT11G16900	No description available.	Chr11	-	View
PT01G47200	No description available.	Chr01	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV19G06810	name=GSVIVG01014846001;	chr19	-	View