PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: AT3G46640
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G59570	Homeodomain-like superfamily protein Encodes BOA (BROTHER OF LUX ARRHYTHMO), a component of the circadian clock. Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G46640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	+	View

Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G54787	No description available.	Bd2	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00081G01120	No description available.	supercontig_81	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA10G02430	CC_gene:EHD1,CC_gene:ARR10,CC_gene:ARR14,CC_gene:ARR18,CC_gene:ARR12,CC_gene:ARR2,CC_gene:ARR1,CC_functional_completeness:complete,PRODUCT:MYB family transcription factor%2C putative%2C expressed,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr10	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS01G62660	MYB family transcription factor, putative, expressed	1	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT09G03500	No description available.	Chr09	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI005G38760	No description available.	scaffold_5	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G005680	Transcription factor (Fragment) (AHRD V1 *- D6MKQ8_9ASPA)%3B contains Interpro domain(s) IPR006447 Myb-like DNA-binding region%2C SHAQKYF class	ch06	+	View
SL06G076350	Transcription factor (Fragment) (AHRD V1 -- D6MKQ8_9ASPA)%3B contains Interpro domain(s) IPR006447 Myb-like DNA-binding region%2C SHAQKYF class	ch06	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV06G03190	name=GSVIVG01024916001;	chr6	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM03G27120	No description available.	3	-	View