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WorkbenchGene: AT3G46640 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT3G46640
- Transcript Identifier
- AT3G46640.3
- Gene Type
- Coding gene
- Location
- 3 : 17183248-17184989 : positive
Family
- Gene family
- Duplication type
- Block duplicate
Descriptions
- Description
-
Homeodomain-like superfamily protein
- Curated Summary
-
Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.
Identifiers
| Identifier | Name |
|---|---|
| alias | PCL1 |
| alias | LUX |
| alias | LUX ARRHYTHMO |
| alias | PHYTOCLOCK 1 |
| uniprot | Q9SNB4 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006355 | IEA, TAS | UniProt | regulation of transcription, DNA-dependent | 1 2 3 4 5 6 7 8 9 10 11 12 |
| GO:0007623 | IEP, IMP | UniProt | circadian rhythm | 1 2 3 4 5 6 7 8 9 10 11 12 |
| GO:0042753 | IMP | UniProt | positive regulation of circadian rhythm | 1 2 3 4 5 6 7 8 9 10 11 |
| GO:0006351 | IEA | UniProt | transcription, DNA-templated | 1 2 3 4 5 6 7 8 9 10 11 |
| GO:0000160 | IEA | PLAZA Homology | phosphorelay signal transduction system | HOM03M000170 |
| GO:2001141 | IEA | PLAZA Homology | regulation of RNA biosynthetic process | HOM03M000170 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0003677 | IEA, ISS | UniProt | DNA binding | 1 2 3 4 5 6 7 8 9 10 11 12 |
| GO:0003700 | ISS | Gene Ontology | sequence-specific DNA binding transcription factor activity | 1 |
| GO:0003682 | IEA | UniProt | chromatin binding | 1 2 3 4 5 6 7 8 9 10 11 |
| GO:0060089 | IEA | PLAZA Homology | molecular transducer activity | HOM03M000170 |
| GO:0000156 | IEA | PLAZA Homology | phosphorelay response regulator activity | HOM03M000170 |
| GO:0004871 | IEA | PLAZA Homology | signal transducer activity | HOM03M000170 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005634 | IDA, ISM | UniProt | nucleus | 1 2 3 4 5 6 7 8 9 10 11 12 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.3.20 | RNA.regulation of transcription.G2-like transcription factor family, GARP |
No SignalP domains detected for this gene.