Anchorpoints

Gene id
AT1G10560
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G60190Encodes PUB19, a plant U-box armadillo repeat protein. Involved in salt inhibition of germination together with PUB18. ARM repeat superfamily protein ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 18 (TAIR:AT1G10560.1); Has 2852 Blast hits to 2737 proteins in 198 species: Archae - 2; Bacteria - 22; Metazoa - 274; Fungi - 109; Plants - 2200; Viruses - 3; Other Eukaryotes - 242 (source: NCBI BLink).1+View


Orthologs (inter-species colinear regions)

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL05G005670U-box domain-containing protein (AHRD V1 *--- D7LSY5_ARALY)%3B contains Interpro domain(s) IPR011989 Armadillo-like helicalch05-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G13870name=GSVIVG01020229001;chr1-View


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Gene id
Species
Description
Chromosome
Strand