Gene: AT1G10560 (Arabidopsis thaliana)

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Gene Identifier
AT1G10560
Transcript Identifier
AT1G10560.1
Gene Type
Coding gene
Location
1 : 3484613-3486706 : positive

Family

Gene family
HOM03M000053
(736 genes in 16 species)
specific family
Subfamily
ORTHO03M007130
(5 genes in 4 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
plant U-box 18
Curated Summary
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
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Identifiers

Identifier Name
aliasplant U-box 18
aliasATPUB18
aliasPUB18
aliasARABIDOPSIS THALIANA PLANT U-BOX 18
uniprotQ9XIJ5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016567IDA, IEAGene Ontologyprotein ubiquitination1
GO:0010029IGIUniProtregulation of seed germination1 2 3 4 5
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03M000053
GO:0032446IEAPLAZA Homologyprotein modification by small protein conjugationHOM03M000053
GO:0070647IEAPLAZA Homologyprotein modification by small protein conjugation or removalHOM03M000053
GO:0043412IEAPLAZA Homologymacromolecule modificationHOM03M000053
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03M000053
GO:0006464IEAPLAZA Homologycellular protein modification processHOM03M000053
GO:0036211IEAPLAZA Homologyprotein modification processHOM03M000053
GO:0019538IEAPLAZA Homologyprotein metabolic processHOM03M000053

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842IDA, IEA, UniProtubiquitin-protein ligase activity1 2 3 4 5
GO:0008270IEAUniProtzinc ion binding1 2 3 4
GO:0005515IEAInterProprotein binding
GO:0005488IEAInterProbinding
GO:0016874IEAPLAZA Homologyligase activityHOM03M000053
GO:0019787IEAPLAZA Homologysmall conjugating protein ligase activityHOM03M000053
GO:0016881IEAPLAZA Homologyacid-amino acid ligase activityHOM03M000053
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03M000053

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000151IEAUniProtubiquitin ligase complex1 2 3 4
GO:0005622IEAPLAZA HomologyintracellularHOM03M000053
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03M000053
GO:1902494IEAPLAZA Homologycatalytic complexHOM03M000053
GO:0005623IEAPLAZA HomologycellHOM03M000053
GO:0043234IEAPLAZA Homologyprotein complexHOM03M000053
GO:0044464IEAPLAZA Homologycell partHOM03M000053
GO:0044424IEAPLAZA Homologyintracellular partHOM03M000053

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003613U box domain
IPR000225Armadillo
IPR011989Armadillo-like helical
IPR016024Armadillo-type fold
IPR013083Zinc finger, RING/FYVE/PHD-type

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.