PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	17	CH_ath_198	4	6	0.00000154537
Arabidopsis thaliana	5	17	CH_ath_385	3	5	0.000805092
Chlamydomonas reinhardtii	chromosome_8	17	CH_cre_61	5	50	0.000426807
Oryza sativa ssp. japonica	7	17	CH_osa_148	6	40	0.0000000792943
Populus trichocarpa	Chr01	17	CH_ptr_368	4	13	0.000138317
Populus trichocarpa	Chr04	17	CH_ptr_367	3	3	0.000134865
Setaria italica	scaffold_2	17	CH_sit_85	6	10	0.0000000000491296
Setaria italica	scaffold_7	17	CH_sit_158	4	4	0.000000135795
Solanum lycopersicum	ch02	17	CH_sly_462	3	5	0.00070469
Vitis vinifera	chr11	17	CH_vvi_119	6	13	0.000000000912516
Zea mays	7	17	CH_zma_149	3	3	0.0000816349

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V