PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_210	4	4	0.00000238148
Populus trichocarpa	Chr01	17	CH_ptr_179	5	5	0.000000033782
Populus trichocarpa	Chr10	17	CH_ptr_252	5	8	0.00000187386
Populus trichocarpa	Chr10	18	CH_ptr_86	10	119	0.0000017873
Setaria italica	scaffold_9	17	CH_sit_436	3	3	0.000730343
Solanum lycopersicum	ch02	17	CH_sly_496	3	3	0.000987545
Solanum lycopersicum	ch04	17	CH_sly_495	3	3	0.000987545
Vitis vinifera	chr6	17	CH_vvi_403	4	9	0.000479109
Vitis vinifera	chr6	18	CH_vvi_107	10	235	0.000295575

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V