PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	17	CH_ath_216	5	6	0.00000301232
Oryza sativa ssp. japonica	9	17	CH_osa_338	5	14	0.000137457
Populus trichocarpa	Chr02	17	CH_ptr_364	5	8	0.000115484
Populus trichocarpa	Chr19	17	CH_ptr_117	10	23	0.000000000106838
Populus trichocarpa	Chr19	18	CH_ptr_68	10	23	0.000000000106838
Solanum lycopersicum	ch03	17	CH_sly_158	6	7	0.0000000563804
Vitis vinifera	chr1	17	CH_vvi_91	8	9	0.00000000000302649
Vitis vinifera	chr14	17	CH_vvi_178	6	8	0.000000160829
Vitis vinifera	chr14	17	CH_vvi_348	5	10	0.000184826
Vitis vinifera	chr19	17	CH_vvi_404	4	5	0.000487488
Vitis vinifera	chr5	17	CH_vvi_228	6	11	0.00000260157
Vitis vinifera	chr14	18	CH_vvi_98	12	149	0.0000664427

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V