PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.11.4.5.2
Description: protein.degradation.ubiquitin.E3.BTB/POZ Cullin3.BTB/POZ

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd3	17	CH_bdi_29	7	8	0.000000000000367236
Brachypodium distachyon	Bd3	17	CH_bdi_256	3	3	0.000700782
Brachypodium distachyon	Bd3	17	CH_bdi_35	10	48	0.00000000000548703
Brachypodium distachyon	Bd4	17	CH_bdi_7	11	15	3.28737e-21
Brachypodium distachyon	Bd4	17	CH_bdi_126	5	11	0.00000265533
Brachypodium distachyon	Bd5	17	CH_bdi_8	11	18	7.60868e-20
Brachypodium distachyon	Bd3	18	CH_bdi_16	10	48	0.00000000000548703
Brachypodium distachyon	Bd3	18	CH_bdi_21	10	80	0.00000000127827
Brachypodium distachyon	Bd4	18	CH_bdi_7	11	15	3.28737e-21
Brachypodium distachyon	Bd5	18	CH_bdi_8	11	18	7.60868e-20
Brachypodium distachyon	Bd5	19	CH_bdi_3	6	18	0.00000000816917
Oryza sativa ssp. japonica	10	17	CH_osa_1	30	55	5.27409e-62
Oryza sativa ssp. japonica	11	17	CH_osa_100	6	11	0.00000000246342
Oryza sativa ssp. japonica	2	17	CH_osa_206	5	12	0.00000200719
Oryza sativa ssp. japonica	4	17	CH_osa_235	4	5	0.00000605616
Oryza sativa ssp. japonica	8	17	CH_osa_61	7	13	0.0000000000189859
Oryza sativa ssp. japonica	8	17	CH_osa_65	6	7	0.0000000000375945
Oryza sativa ssp. japonica	8	17	CH_osa_36	10	31	0.00000000000000407075
Oryza sativa ssp. japonica	10	18	CH_osa_1	43	114	2.19771e-82
Oryza sativa ssp. japonica	8	18	CH_osa_91	10	250	0.00001342
Oryza sativa ssp. japonica	8	18	CH_osa_27	10	31	0.00000000000000407075
Oryza sativa ssp. japonica	11	19	CH_osa_40	3	6	0.000623775
Setaria italica	scaffold_3	17	CH_sit_382	4	8	0.000269578
Setaria italica	scaffold_6	17	CH_sit_10	13	14	1.2591e-27
Setaria italica	scaffold_6	17	CH_sit_42	10	22	0.00000000000000215101
Setaria italica	scaffold_7	17	CH_sit_36	8	8	3.71636e-16
Setaria italica	scaffold_8	17	CH_sit_3	17	22	1.59491e-34
Setaria italica	scaffold_9	17	CH_sit_35	8	8	3.71636e-16
Setaria italica	scaffold_9	17	CH_sit_343	4	7	0.000135135
Setaria italica	scaffold_6	18	CH_sit_13	13	14	1.2591e-27
Setaria italica	scaffold_6	18	CH_sit_32	10	22	0.00000000000000215101
Setaria italica	scaffold_8	18	CH_sit_3	17	22	1.59491e-34
Setaria italica	scaffold_9	18	CH_sit_57	11	196	0.00000191165
Zea mays	1	17	CH_zma_58	4	4	0.0000000576846
Zea mays	6	17	CH_zma_90	4	7	0.00000201342

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V