PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 17.7.1.2
Description: hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oryza sativa ssp. japonica	12	17	CH_osa_342	3	10	0.000157014
Oryza sativa ssp. japonica	3	17	CH_osa_367	3	11	0.00021585
Populus trichocarpa	Chr01	17	CH_ptr_140	4	4	0.00000000224202
Populus trichocarpa	Chr05	17	CH_ptr_163	4	5	0.000000011206
Setaria italica	scaffold_5	17	CH_sit_244	3	4	0.00000698967
Setaria italica	scaffold_9	17	CH_sit_202	3	3	0.00000174788
Solanum lycopersicum	ch01	17	CH_sly_31	7	7	3.40393e-18
Vitis vinifera	chr6	17	CH_vvi_113	5	11	0.000000000347637

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V