PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_283	4	42	0.0000501623
Oryza sativa ssp. japonica	10	17	CH_osa_230	4	11	0.00000508227
Oryza sativa ssp. japonica	11	17	CH_osa_57	6	12	0.00000000000642976
Oryza sativa ssp. japonica	5	17	CH_osa_176	4	7	0.000000540244
Populus trichocarpa	Chr03	17	CH_ptr_296	3	3	0.0000075845
Setaria italica	scaffold_2	17	CH_sit_163	4	6	0.000000193363
Setaria italica	scaffold_7	17	CH_sit_278	3	3	0.000017546
Setaria italica	scaffold_8	17	CH_sit_24	8	10	1.12861e-19
Vitis vinifera	chr16	17	CH_vvi_2	20	22	5.96513e-57
Vitis vinifera	chr16	18	CH_vvi_2	20	22	5.96513e-57
Zea mays	3	17	CH_zma_184	3	8	0.000270253

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V