PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	17	CH_ath_185	3	3	0.000000446389
Oryza sativa ssp. japonica	9	17	CH_osa_71	4	4	0.0000000000683776
Populus trichocarpa	Chr09	17	CH_ptr_107	5	7	0.0000000000258679
Setaria italica	scaffold_2	17	CH_sit_142	4	7	0.0000000259392
Solanum lycopersicum	ch11	17	CH_sly_174	5	38	0.000000123294
Vitis vinifera	chrUn	17	CH_vvi_218	4	7	0.0000018858
Vitis vinifera	chrUn	17	CH_vvi_37	12	64	1.29337e-19
Vitis vinifera	chrUn	17	CH_vvi_162	4	4	0.0000000540289
Vitis vinifera	chrUn	18	CH_vvi_33	12	64	1.29337e-19

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V