PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_353	3	6	0.000275886
Brachypodium distachyon	Bd1	17	CH_bdi_19	6	6	0.00000000000000553957
Brachypodium distachyon	Bd3	17	CH_bdi_82	4	5	0.0000000569227
Oryza sativa ssp. japonica	2	17	CH_osa_67	5	7	0.0000000000523023
Oryza sativa ssp. japonica	6	17	CH_osa_26	7	8	4.49472e-18
Populus trichocarpa	Chr01	17	CH_ptr_294	3	4	0.00000681835
Populus trichocarpa	Chr03	17	CH_ptr_293	3	4	0.00000681835
Setaria italica	scaffold_1	17	CH_sit_103	5	9	0.000000000780192
Setaria italica	scaffold_4	17	CH_sit_20	8	9	1.16823e-20
Setaria italica	scaffold_7	17	CH_sit_304	3	4	0.0000561515

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V