PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR027417
Description: P-loop containing nucleoside triphosphate hydrolase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	14	CH_ath_47	11	34	0.000219932
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_260	14	31	0.00000000501724
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_95	12	31	0.00000277851
Oryza sativa ssp. indica	Chr07	14	CH_osaindica_83	11	16	0.00000000422832
Oryza sativa ssp. indica	Chr07	14	CH_osaindica_120	18	116	0.000845417
Oryza sativa ssp. indica	Chr10	14	CH_osaindica_84	14	31	0.00000000501724
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_114	29	270	0.000300606
Oryza sativa ssp. japonica	10	13	CH_osa_110	18	41	0.000000000000341234
Oryza sativa ssp. japonica	1	14	CH_osa_111	11	26	0.00000162956
Oryza sativa ssp. japonica	10	14	CH_osa_71	18	41	0.000000000000341234
Oryza sativa ssp. japonica	7	14	CH_osa_96	10	15	0.0000000302644
Ostreococcus lucimarinus	Chr_2	13	CH_olu_8	10	16	0.0000278793
Ostreococcus lucimarinus	Chr_2	14	CH_olu_1	10	16	0.0000278793
Setaria italica	scaffold_9	13	CH_sit_403	7	7	0.00000598692
Solanum lycopersicum	ch08	13	CH_sly_353	19	75	0.00000269698
Solanum lycopersicum	ch11	13	CH_sly_719	11	31	0.000546329
Solanum lycopersicum	ch06	14	CH_sly_70	31	226	0.0000760673
Solanum lycopersicum	ch06	14	CH_sly_76	11	32	0.000802453
Solanum lycopersicum	ch08	14	CH_sly_63	19	75	0.00000269698
Solanum lycopersicum	ch11	14	CH_sly_74	11	31	0.000546329
Sorghum bicolor	chr_2	14	CH_sbi_63	12	27	0.00000293442
Sorghum bicolor	chr_2	14	CH_sbi_70	11	27	0.00005675
Vitis vinifera	chr13	13	CH_vvi_389	20	79	0.00000787937
Vitis vinifera	chr9	13	CH_vvi_94	25	56	0.0000000000000104998
Vitis vinifera	chr7	14	CH_vvi_71	10	13	0.000000269255
Vitis vinifera	chr9	14	CH_vvi_48	49	220	4.40114e-16
Zea mays	10	13	CH_zma_220	9	15	0.00000366199

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V