PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_30	13	CH_cpa_208	4	7	0.0000874158
Chlamydomonas reinhardtii	chromosome_10	13	CH_cre_21	7	7	0.00000000267035
Chlamydomonas reinhardtii	chromosome_10	14	CH_cre_10	13	99	0.0000463889
Oryza sativa ssp. japonica	11	13	CH_osa_425	5	9	0.00000329315
Oryza sativa ssp. japonica	3	13	CH_osa_129	7	8	0.00000000000238504
Ostreococcus lucimarinus	Chr_14	13	CH_olu_101	5	13	0.000772817
Populus trichocarpa	Chr11	13	CH_ptr_4	30	47	2.64195e-51
Populus trichocarpa	Chr11	14	CH_ptr_5	32	51	1.24896e-54
Sorghum bicolor	chr_5	13	CH_sbi_18	15	20	7.28261e-28
Sorghum bicolor	chr_5	14	CH_sbi_18	15	20	7.28261e-28
Sorghum bicolor	chr_5	15	CH_sbi_1	12	12	5.71926e-26
Sorghum bicolor	chr_5	16	CH_sbi_1	12	12	5.71926e-26
Vitis vinifera	chr16	13	CH_vvi_497	4	4	0.0000912068
Vitis vinifera	chr3	13	CH_vvi_496	4	4	0.0000912068
Vitis vinifera	chr5	13	CH_vvi_38	16	30	3.01437e-22
Vitis vinifera	chr7	13	CH_vvi_121	8	9	0.00000000000258475
Vitis vinifera	chr9	13	CH_vvi_161	7	8	0.00000000030852
Vitis vinifera	chr5	14	CH_vvi_35	16	30	3.01437e-22

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V