PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	13	CH_ath_58	8	12	0.000000000000367037
Brachypodium distachyon	Bd1	13	CH_bdi_92	6	8	0.000000000484604
Carica papaya	supercontig_132	13	CH_cpa_55	7	22	0.00000000168312
Carica papaya	supercontig_62	13	CH_cpa_121	4	4	0.000000803929
Populus trichocarpa	Chr03	13	CH_ptr_40	20	80	1.38705e-25
Populus trichocarpa	Chr04	13	CH_ptr_16	18	21	4.44263e-36
Populus trichocarpa	Chr04	13	CH_ptr_476	4	4	0.0000127446
Populus trichocarpa	Chr11	13	CH_ptr_189	7	10	0.000000000106881
Populus trichocarpa	Chr03	14	CH_ptr_41	20	80	1.38705e-25
Populus trichocarpa	Chr04	14	CH_ptr_17	18	21	4.44263e-36
Setaria italica	scaffold_3	13	CH_sit_684	4	10	0.000402537
Setaria italica	scaffold_7	13	CH_sit_19	11	12	1.69754e-23
Setaria italica	scaffold_7	14	CH_sit_22	11	12	1.69754e-23
Solanum lycopersicum	ch08	14	CH_sly_41	10	16	2.33791e-17

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V