PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013831
Description: SGNH hydrolase-type esterase domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_76	13	CH_cpa_127	4	4	0.00000133877
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_153	8	16	0.00000000000309568
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_51	12	25	7.04165e-20
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_798	4	8	0.000269177
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_374	6	16	0.000000244276
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_313	6	12	0.000000028461
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_145	8	15	0.00000000000155169
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_711	4	7	0.000134898
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_368	5	7	0.000000230914
Oryza sativa ssp. indica	Chr01	14	CH_osaindica_47	12	25	7.04165e-20
Oryza sativa ssp. indica	Chr02	15	CH_osaindica_103	4	14	0.00095582
Oryza sativa ssp. indica	Chr03	15	CH_osaindica_8	6	10	0.000000000802365
Oryza sativa ssp. japonica	2	13	CH_osa_511	5	17	0.0000254815
Oryza sativa ssp. japonica	3	13	CH_osa_356	5	9	0.00000052702
Populus trichocarpa	Chr11	13	CH_ptr_130	7	7	0.000000000000535904
Populus trichocarpa	Chr17	13	CH_ptr_257	10	70	0.00000000921827
Populus trichocarpa	Chr18	13	CH_ptr_90	9	11	4.16772e-16
Populus trichocarpa	Chr19	13	CH_ptr_47	12	15	1.75603e-22
Populus trichocarpa	Chr11	14	CH_ptr_99	11	147	0.000000786734
Populus trichocarpa	Chr17	14	CH_ptr_91	10	70	0.00000000921827
Populus trichocarpa	Chr18	14	CH_ptr_108	11	257	0.000297874
Populus trichocarpa	Chr19	14	CH_ptr_46	12	15	1.75603e-22
Populus trichocarpa	Chr10	15	CH_ptr_32	3	3	0.00067751
Populus trichocarpa	Chr19	15	CH_ptr_4	6	8	0.000000000291701
Setaria italica	scaffold_4	13	CH_sit_156	6	6	0.000000000198639
Setaria italica	scaffold_5	13	CH_sit_230	6	9	0.0000000165083
Setaria italica	scaffold_9	13	CH_sit_428	4	4	0.0000114893
Setaria italica	scaffold_9	13	CH_sit_525	4	5	0.0000572532
Solanum lycopersicum	ch01	13	CH_sly_71	8	8	4.71851e-16
Solanum lycopersicum	ch02	13	CH_sly_105	8	12	0.00000000000023093
Solanum lycopersicum	ch02	13	CH_sly_702	5	23	0.000455567
Solanum lycopersicum	ch01	14	CH_sly_72	10	227	0.000205448
Solanum lycopersicum	ch02	14	CH_sly_55	13	176	0.00000000134694
Solanum lycopersicum	ch05	15	CH_sly_49	3	3	0.000437292
Vitis vinifera	chr14	13	CH_vvi_384	4	4	0.00000610177
Zea mays	3	13	CH_zma_65	6	7	0.000000000158136
Zea mays	8	13	CH_zma_112	6	11	0.0000000103364

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V