PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	13	CH_ath_92	6	9	0.000000000040784
Musa acuminata	chr4	13	CH_mac_52	5	5	0.00000000124858
Musa acuminata	chr4	15	CH_mac_13	3	3	0.0000597685
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_103	8	17	0.0000000000000173335
Oryza sativa ssp. indica	Chr03	14	CH_osaindica_81	10	151	0.00000000127098
Oryza sativa ssp. japonica	4	13	CH_osa_37	14	75	1.65597e-22
Oryza sativa ssp. japonica	4	14	CH_osa_35	14	75	1.65597e-22
Populus trichocarpa	Chr19	13	CH_ptr_246	5	6	0.00000000623008
Solanum lycopersicum	ch02	13	CH_sly_460	4	8	0.0000340819
Solanum lycopersicum	ch06	13	CH_sly_475	5	25	0.0000470432

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V