PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	13	CH_bdi_352	3	3	0.000209569
Carica papaya	supercontig_190	13	CH_cpa_78	5	14	0.0000000445813
Chlamydomonas reinhardtii	chromosome_12	13	CH_cre_5	18	40	9.25365e-25
Chlamydomonas reinhardtii	chromosome_13	13	CH_cre_80	4	4	0.0000418382
Chlamydomonas reinhardtii	chromosome_17	13	CH_cre_7	16	66	1.57386e-16
Chlamydomonas reinhardtii	chromosome_17	13	CH_cre_9	16	74	0.00000000000000118064
Chlamydomonas reinhardtii	chromosome_6	13	CH_cre_2	26	66	1.68522e-35
Chlamydomonas reinhardtii	chromosome_6	13	CH_cre_3	26	80	7.25381e-33
Chlamydomonas reinhardtii	chromosome_12	14	CH_cre_5	18	40	9.25365e-25
Chlamydomonas reinhardtii	chromosome_17	14	CH_cre_4	28	142	7.39663e-29
Chlamydomonas reinhardtii	chromosome_6	14	CH_cre_1	56	265	1.54981e-65
Chlamydomonas reinhardtii	chromosome_12	15	CH_cre_11	4	7	0.0000168225
Chlamydomonas reinhardtii	chromosome_13	15	CH_cre_5	4	4	0.000000483208
Chlamydomonas reinhardtii	chromosome_17	15	CH_cre_1	8	40	0.000000000632247
Chlamydomonas reinhardtii	chromosome_17	15	CH_cre_15	4	10	0.000100399
Chlamydomonas reinhardtii	chromosome_6	15	CH_cre_6	4	5	0.00000241176
Chlamydomonas reinhardtii	chromosome_6	15	CH_cre_3	8	61	0.0000000233281
Chlamydomonas reinhardtii	chromosome_17	16	CH_cre_1	12	118	0.000000000000705992
Chlamydomonas reinhardtii	chromosome_6	16	CH_cre_2	12	203	0.000000000529587
Sorghum bicolor	chr_1	13	CH_sbi_568	3	3	0.000191865

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V