PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	13	CH_ath_156	9	57	0.0000000075247
Arabidopsis thaliana	5	14	CH_ath_31	13	164	0.000000000286999
Carica papaya	supercontig_106	13	CH_cpa_134	4	4	0.00000223583
Carica papaya	supercontig_117	13	CH_cpa_108	5	8	0.000000386006
Carica papaya	supercontig_173	13	CH_cpa_159	5	13	0.00000875664
Carica papaya	supercontig_30	13	CH_cpa_416	3	3	0.000708553
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_266	5	7	0.00000000636974
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_272	6	18	0.00000000752127
Oryza sativa ssp. japonica	1	13	CH_osa_322	4	4	0.000000174865
Oryza sativa ssp. japonica	4	13	CH_osa_789	3	4	0.000536507
Populus trichocarpa	Chr07	13	CH_ptr_460	5	15	0.0000107566
Solanum lycopersicum	ch01	13	CH_sly_806	3	3	0.000925641
Solanum lycopersicum	ch01	13	CH_sly_354	4	4	0.00000270865
Solanum lycopersicum	ch03	13	CH_sly_551	4	7	0.0000941369
Sorghum bicolor	chr_2	13	CH_sbi_433	4	8	0.0000376368
Sorghum bicolor	chr_5	13	CH_sbi_82	7	8	0.0000000000000291789
Vitis vinifera	chr3	13	CH_vvi_230	5	8	0.0000000465367

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V