Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR000845
- Description
- Nucleoside phosphorylase domain
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 4 | 13 | CH_ath_535 | 2 | 2 | 0.000595203 |
Brachypodium distachyon | Bd1 | 13 | CH_bdi_366 | 2 | 2 | 0.000225149 |
Brachypodium distachyon | Bd1 | 15 | CH_bdi_18 | 2 | 2 | 0.000225149 |
Oryza sativa ssp. indica | Chr06 | 13 | CH_osaindica_921 | 2 | 3 | 0.000648586 |
Oryza sativa ssp. indica | Chr06 | 15 | CH_osaindica_92 | 2 | 3 | 0.000648586 |
Oryza sativa ssp. japonica | 6 | 13 | CH_osa_685 | 2 | 2 | 0.000214091 |
Oryza sativa ssp. japonica | 6 | 15 | CH_osa_81 | 2 | 2 | 0.000214091 |
Populus trichocarpa | Chr08 | 13 | CH_ptr_404 | 3 | 3 | 0.00000169281 |
Populus trichocarpa | Chr13 | 13 | CH_ptr_449 | 3 | 4 | 0.00000676955 |
Populus trichocarpa | Chr13 | 13 | CH_ptr_156 | 6 | 26 | 0.00000000000791055 |
Setaria italica | scaffold_4 | 13 | CH_sit_662 | 2 | 2 | 0.000338247 |
Setaria italica | scaffold_4 | 15 | CH_sit_21 | 2 | 2 | 0.000338247 |
Sorghum bicolor | chr_3 | 13 | CH_sbi_599 | 2 | 2 | 0.000348928 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |