Anchorpoints

Gene id
MD10G018780
Organism
Malus domestica

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G20230No description available.scaffold_4-View
AL1G32230No description available.scaffold_1-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G30860RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G34920.1); Has 4912 Blast hits to 4241 proteins in 362 species: Archae - 9; Bacteria - 172; Metazoa - 2090; Fungi - 292; Plants - 512; Viruses - 97; Other Eukaryotes - 1740 (source: NCBI BLink). RING/U-box superfamily protein1-View
AT5G44690unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).5-View
AT2G34920embryo sac development arrest 18 (EDA18); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 2267 Blast hits to 2247 proteins in 225 species: Archae - 3; Bacteria - 29; Metazoa - 1450; Fungi - 60; Plants - 428; Viruses - 44; Other Eukaryotes - 253 (source: NCBI BLink). RING/U-box superfamily protein2-View
AT4G20160LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink).4+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR01G10920No description available.A01+View
BR09G27710No description available.A09+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G25990No description available.Chr1+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00007G00060No description available.CM3.5_scaffold00007-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G03470No description available.scaffold_8+View
CRU_004G16040No description available.scaffold_4-View
CRU_001G27980No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00008G01450No description available.scaffold00008-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G32770No description available.scaffold_5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G11800Uro-adherence factor A, Precursor (probable)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM15G16661No description available.Gm15-View
GM09G05320No description available.Gm09-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR08G05200No description available.Chr08+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G437720zinc finger C C3HC4 type (RING finger) proteinchr2-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G11420No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G15640No description available.Chr03+View
PT01G07480No description available.Chr01-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL10G005220Neuralized (AHRD V1 *--- B4M452_DROVI)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech10-View
SL02G082100Neuralized (AHRD V1 *--- B4M452_DROVI)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G025460Neuralized (AHRD V1 *--- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr02+View
ST10G006480Neuralized (AHRD V1 *-*- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr10-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G00140No description available.scaffold_2-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G17220similar to AT2G34920|EDA18 (embryo sac development arrest 18)ch4-6-View
TP2G09500No description available.ch2-4-View
TP7G18590No description available.ch7-4+View
TP1G26760similar to AT1G30860|protein binding / zinc ion bindingch1-1-View


Download

Gene id
Species
Description
Chromosome
Strand