Anchorpoints

Gene id
BV3G14520
Organism
Beta vulgaris

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BV4G14600No description available.Bvchr4.sca001+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL4G31480No description available.scaffold_4-View
AL1G05210No description available.scaffold_1-View
AL5G30440No description available.scaffold_5-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G59850Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4315 Blast hits to 4302 proteins in 546 species: Archae - 4; Bacteria - 1265; Metazoa - 14; Fungi - 1413; Plants - 1493; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink).3-View
AT2G43860Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4137 Blast hits to 4117 proteins in 495 species: Archae - 10; Bacteria - 1220; Metazoa - 14; Fungi - 1275; Plants - 1494; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).2-View
AT1G05650Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4; Bacteria - 1133; Metazoa - 14; Fungi - 1282; Plants - 1474; Viruses - 2; Other Eukaryotes - 116 (source: NCBI BLink). Pectin lyase-like superfamily protein1-View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00066G01300No description available.scaffold00066+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G26270No description available.A04-View
BR03G21750No description available.A03+View
BR09G39500No description available.A09-View
BR05G03800No description available.A05+View
BR08G30860No description available.A08+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00250G00030No description available.supercontig_250-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G04680No description available.scaffold_1-View
CRU_004G25420No description available.scaffold_4-View
CRU_005G25180No description available.scaffold_5-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00180G00010No description available.scaffold00180-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0008G02310No description available.scaffold_8-View
EG0008G15730No description available.scaffold_8-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G02360Polygalacturonase (PG), Precursor (similar to)LG1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD15G007940No description available.15-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G66710polygalacturonase, putative, expressed1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_007G28540No description available.scaffold_7-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G17760No description available.Chr10+View
PT07G14410No description available.Chr07-View
PT17G00350No description available.Chr17+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G014540Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO)%3B contains Interpro domain(s) IPR012334 Pectin lyase foldch08-View
SL12G019120Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO)%3B contains Interpro domain(s) IPR012334 Pectin lyase foldch12-View
SL12G096730Polygalacturonase (AHRD V1 ***- O22610_SOLLC)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28ch12+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST12G014400Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28chr12-View
ST12G029070Polygalacturonase (AHRD V1 ***- O22610_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase foldchr12+View
ST08G010390Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase foldchr08-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G00250No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP4G25940similar to AT2G43860|polygalacturonase, putative / pectinase, putativech4-6-View
TP5G03280similar to AT3G59850|polygalacturonase, putative / pectinase, putativech5-1+View


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Gene id
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Description
Chromosome
Strand