Anchorpoints
- Gene id
- BV3G14520
- Organism
- Beta vulgaris
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV4G14600 | No description available. | Bvchr4.sca001 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL4G31480 | No description available. | scaffold_4 | - | View |
AL1G05210 | No description available. | scaffold_1 | - | View |
AL5G30440 | No description available. | scaffold_5 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G59850 | Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4315 Blast hits to 4302 proteins in 546 species: Archae - 4; Bacteria - 1265; Metazoa - 14; Fungi - 1413; Plants - 1493; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink). | 3 | - | View |
AT2G43860 | Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4137 Blast hits to 4117 proteins in 495 species: Archae - 10; Bacteria - 1220; Metazoa - 14; Fungi - 1275; Plants - 1494; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | 2 | - | View |
AT1G05650 | Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4; Bacteria - 1133; Metazoa - 14; Fungi - 1282; Plants - 1474; Viruses - 2; Other Eukaryotes - 116 (source: NCBI BLink). Pectin lyase-like superfamily protein | 1 | - | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00066G01300 | No description available. | scaffold00066 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR04G26270 | No description available. | A04 | - | View |
BR03G21750 | No description available. | A03 | + | View |
BR09G39500 | No description available. | A09 | - | View |
BR05G03800 | No description available. | A05 | + | View |
BR08G30860 | No description available. | A08 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00250G00030 | No description available. | supercontig_250 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_001G04680 | No description available. | scaffold_1 | - | View |
CRU_004G25420 | No description available. | scaffold_4 | - | View |
CRU_005G25180 | No description available. | scaffold_5 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00180G00010 | No description available. | scaffold00180 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0008G02310 | No description available. | scaffold_8 | - | View |
EG0008G15730 | No description available. | scaffold_8 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV1G02360 | Polygalacturonase (PG), Precursor (similar to) | LG1 | - | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD15G007940 | No description available. | 15 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS01G66710 | polygalacturonase, putative, expressed | 1 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G28540 | No description available. | scaffold_7 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G17760 | No description available. | Chr10 | + | View |
PT07G14410 | No description available. | Chr07 | - | View |
PT17G00350 | No description available. | Chr17 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL08G014540 | Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO)%3B contains Interpro domain(s) IPR012334 Pectin lyase fold | ch08 | - | View |
SL12G019120 | Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO)%3B contains Interpro domain(s) IPR012334 Pectin lyase fold | ch12 | - | View |
SL12G096730 | Polygalacturonase (AHRD V1 ***- O22610_SOLLC)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28 | ch12 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST12G014400 | Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 | chr12 | - | View |
ST12G029070 | Polygalacturonase (AHRD V1 ***- O22610_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold | chr12 | + | View |
ST08G010390 | Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold | chr08 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0005G00250 | No description available. | scaffold_5 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP4G25940 | similar to AT2G43860|polygalacturonase, putative / pectinase, putative | ch4-6 | - | View |
TP5G03280 | similar to AT3G59850|polygalacturonase, putative / pectinase, putative | ch5-1 | + | View |