Anchorpoints
- Gene id
- BR09G44730
- Organism
- Brassica rapa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR01G00160 | No description available. | A01 | - | View |
BR08G20190 | No description available. | A08 | + | View |
BR06G39610 | No description available. | A06 | + | View |
BR04G11840 | No description available. | A04 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL7G00790 | No description available. | scaffold_7 | - | View |
AL4G00390 | No description available. | scaffold_4 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G21240 | basic pentacysteine 4 basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development. | 2 | - | View |
AT4G38910 | basic pentacysteine 5 (BPC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2). basic pentacysteine 5 Encodes a basic pentacysteine protein that is localized to the nucleus and specifically binds in vitro to GA dinucleotide repeats. | 4 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL08G14210 | No description available. | Chr8 | - | View |
CL02G04710 | No description available. | Chr2 | - | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00014G03580 | No description available. | CM3.5_scaffold00014 | + | View |
CM00019G03170 | No description available. | CM3.5_scaffold00019 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00150G00090 | No description available. | supercontig_150 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_004G00290 | No description available. | scaffold_4 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0009G10720 | No description available. | scaffold_9 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM06G02880 | No description available. | Gm06 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME02994G00070 | No description available. | scaffold02994 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G37770 | No description available. | scaffold_1 | - | View |
PPE_008G10070 | No description available. | scaffold_8 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT02G02670 | No description available. | Chr02 | - | View |
PT04G16370 | No description available. | Chr04 | + | View |
PT09G12530 | No description available. | Chr09 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL01G110470 | GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR)%3B contains Interpro domain(s) IPR010409 GAGA binding-like | ch01 | + | View |
SL02G084230 | GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR)%3B contains Interpro domain(s) IPR010409 GAGA binding-like | ch02 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST02G027470 | GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like | chr02 | - | View |
ST01G047920 | GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like | chr01 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G07050 | No description available. | scaffold_2 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP7G36930 | similar to AT4G38910|BPC5 (BASIC PENTACYSTEINE 5) | ch7-6 | + | View |
TP4G00440 | similar to AT2G21240|BPC4 (BASIC PENTACYSTEINE 4) | ch4-1 | - | View |