PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: BR02G39810
Organism: Brassica rapa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G02810	No description available.	scaffold_3	-	View
AL6G17380	No description available.	scaffold_6	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G03450	RGA-like 2 Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development. RGA-like 2 (RGL2); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like protein 3 (TAIR:AT5G17490.1); Has 2697 Blast hits to 2637 proteins in 314 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2690; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).	3	-	View
AT5G17490	RGA-like protein 3 DELLA subfamily member involved in GA signal transduction RGA-like protein 3 (RGL3); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like 2 (TAIR:AT3G03450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_003G02470	No description available.	scaffold_3	-	View
CRU_006G15340	No description available.	scaffold_6	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM20G30150	No description available.	Gm20	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G14240	No description available.	Chr17	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G014830	GRAS family transcription factor (AHRD V1 *- B9IH45_POPTR)%3B contains Interpro domain(s) IPR005202 GRAS transcription factor	ch04	-	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP6G26730	similar to AT5G17490\|RGL3 (RGA-LIKE PROTEIN 3)	ch6-6	+	View
TP3G02450	similar to AT3G03450\|RGL2 (RGA-LIKE 2)	ch3-1	-	View