PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AT4G01370
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G73670	member of MAP Kinase MAP kinase 15 MAP kinase 15 (MPK15); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G18150.3); Has 118424 Blast hits to 117259 proteins in 3821 species: Archae - 110; Bacteria - 13457; Metazoa - 43793; Fungi - 12258; Plants - 28693; Viruses - 571; Other Eukaryotes - 19542 (source: NCBI BLink).	1	+	View
AT1G18150	Encodes mitogen-activated protein kinase 8 (MPK8). MPK8 connects protein phosphorylation, Ca2+, and ROS in the wound-signaling pathway. ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1); Has 120859 Blast hits to 119547 proteins in 3851 species: Archae - 100; Bacteria - 13809; Metazoa - 44780; Fungi - 12408; Plants - 29345; Viruses - 570; Other Eukaryotes - 19847 (source: NCBI BLink). Protein kinase superfamily protein	1	-	View
AT1G01560	member of MAP Kinase MAP kinase 11 (MPK11); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). MAP kinase 11	1	+	View
AT2G46070	Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. mitogen-activated protein kinase 12 mitogen-activated protein kinase 12 (MPK12); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 125734 Blast hits to 124415 proteins in 4732 species: Archae - 106; Bacteria - 13752; Metazoa - 47505; Fungi - 12616; Plants - 30542; Viruses - 578; Other Eukaryotes - 20635 (source: NCBI BLink).	2	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL2G22510	No description available.	scaffold_2	+	View
AL6G40230	No description available.	scaffold_6	-	View
AL4G34060	No description available.	scaffold_4	-	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR06G12870	No description available.	A06	-	View

Beta vulgaris

Gene id	Description	Chromosome	Strand	Multiplicon
BV1G06170	No description available.	Bvchr1.sca001	+	View
BV5G07010	No description available.	Bvchr5.sca002	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL04G10600	No description available.	Chr4	+	View
CL06G02300	No description available.	Chr6	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00047G00510	No description available.	CM3.5_scaffold00047	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00184G00160	No description available.	supercontig_184	-	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_006G35190	No description available.	scaffold_6	+	View
CRU_001G17020	No description available.	scaffold_1	-	View
CRU_001G00620	No description available.	scaffold_1	-	View
CRU_004G27730	No description available.	scaffold_4	-	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00009G01370	No description available.	scaffold00009	-	View
CS00001G03470	No description available.	scaffold00001	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0005G00970	No description available.	scaffold_5	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM16G03670	No description available.	Gm16	+	View
GM09G39190	No description available.	Gm09	+	View
GM03G38850	No description available.	Gm03	+	View
GM07G07270	No description available.	Gm07	+	View
GM05G37480	No description available.	Gm05	+	View

Gossypium raimondii

Gene id	Description	Chromosome	Strand	Multiplicon
GR08G12010	No description available.	Chr08	+	View
GR04G15670	No description available.	Chr04	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME02658G00980	No description available.	scaffold02658	+	View
ME05280G00640	No description available.	scaffold05280	-	View
ME03581G01480	No description available.	scaffold03581	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT8G028720	MAP kinase	chr8	+	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_002G17060	No description available.	scaffold_2	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT14G08850	No description available.	Chr14	-	View
PT01G09990	No description available.	Chr01	+	View
PT02G16250	No description available.	Chr02	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30174G03270	No description available.	30174	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G094960	Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC)%3B contains Interpro domain(s) IPR008351 JNK MAP kinase	ch01	+	View
SL08G081490	Mitogen-activated protein kinase (AHRD V1 **** Q8LT16_SOLTU)%3B contains Interpro domain(s) IPR008351 JNK MAP kinase	ch08	-	View

Solanum tuberosum

Gene id	Description	Chromosome	Strand	Multiplicon
ST01G032370	Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	chr01	+	View
ST05G022310	Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	chr05	+	View
ST08G028940	Mitogen-activated protein kinase (AHRD V1 **** Q8LT16_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase	chr08	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0003G28090	No description available.	scaffold_3	-	View
TC0001G35170	No description available.	scaffold_1	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G16140	similar to AT1G18150\|ATMPK8	ch1-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV15G05440	name=GSVIVG01026984001;	chr15	-	View
VV07G09820	name=GSVIVG01028190001;	chr7	-	View