PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: AT2G42580
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G53300	tetratricopetide-repeat thioredoxin-like 1 Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis. tetratricopetide-repeat thioredoxin-like 1 (TTL1); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 2 (TAIR:AT3G14950.1); Has 32097 Blast hits to 15852 proteins in 1300 species: Archae - 552; Bacteria - 6287; Metazoa - 8110; Fungi - 3609; Plants - 2668; Viruses - 128; Other Eukaryotes - 10743 (source: NCBI BLink).	1	+	View
AT3G58620	tetratricopetide-repeat thioredoxin-like 4 (TTL4); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 3 (TAIR:AT2G42580.1); Has 21785 Blast hits to 12872 proteins in 1130 species: Archae - 748; Bacteria - 6255; Metazoa - 5785; Fungi - 2015; Plants - 2355; Viruses - 3; Other Eukaryotes - 4624 (source: NCBI BLink). Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. The TTL family is required for osmotic stress tolerance and male sporogenesis. tetratricopetide-repeat thioredoxin-like 4	3	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL5G29200	No description available.	scaffold_5	+	View
AL4G29960	No description available.	scaffold_4	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR05G03000	No description available.	A05	+	View
BR09G38730	No description available.	A09	+	View
BR03G21150	No description available.	A03	+	View

Capsella rubella

Gene id	Description	Chromosome	Strand	Multiplicon
CRU_004G24130	No description available.	scaffold_4	+	View
CRU_005G24030	No description available.	scaffold_5	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00041G00160	No description available.	scaffold00041	+	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0011G09380	No description available.	scaffold_11	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM12G33770	No description available.	Gm12	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD11G023600	No description available.	11	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP1G39880	similar to AT1G53300\|TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1)	ch1-2	+	View
TP4G24720	similar to AT2G42580\|TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3)	ch4-6	+	View
TP5G04250	similar to AT3G58620\|TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4)	ch5-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV12G02800	name=GSVIVG01020699001;	chr12	-	View