Anchorpoints

Gene id
AT1G63840
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G41400RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View
AT4G11360RING-H2 finger A1B (RHA1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to cadmium ion, response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A1A (TAIR:AT4G11370.1); Has 7546 Blast hits to 7528 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 1890; Fungi - 589; Plants - 4122; Viruses - 19; Other Eukaryotes - 926 (source: NCBI BLink). RING-H2 finger A1B Encodes a putative RING-H2 finger protein RHA1b.4+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G36260No description available.scaffold_7+View
AL6G34080No description available.scaffold_6+View
AL2G01250No description available.scaffold_2+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR08G10000No description available.A08-View
BR09G12590No description available.A09+View
BR09G11410No description available.A09-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV5G07200No description available.Bvchr5.sca002+View
BV1G06230No description available.Bvchr1.sca001+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G01670No description available.Chr5+View
CL01G02310No description available.Chr1+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G06700No description available.CM3.5_scaffold00005-View
CM00006G01760No description available.CM3.5_scaffold00006+View
CM00047G00540No description available.CM3.5_scaffold00047+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G01030No description available.scaffold_2+View
CRU_007G32740No description available.scaffold_7+View
CRU_006G29110No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01240No description available.scaffold00009-View
CS00001G03400No description available.scaffold00001-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0004G14730No description available.scaffold_4+View
EG0005G05590No description available.scaffold_5-View
EG0004G19070No description available.scaffold_4-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV7G07460RING-H2 zinc finger protein RHA1a (probable)LG7+View
FV5G03280RING-H2 zinc finger protein RHA1b (probable)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM05G37580No description available.Gm05+View
GM11G02470No description available.Gm11+View
GM18G47020No description available.Gm18-View
GM08G02000No description available.Gm08-View
GM01G43020No description available.Gm01-View
GM07G07400No description available.Gm07+View
GM09G39280No description available.Gm09+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR04G13960No description available.Chr04+View
GR07G10170No description available.Chr07-View
GR07G02400No description available.Chr07-View
GR08G12060No description available.Chr08+View
GR03G15650No description available.Chr03+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME02658G01040No description available.scaffold02658+View
ME05280G00530No description available.scaffold05280-View
ME03581G01530No description available.scaffold03581+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G098770RING-H2 zinc finger proteinchr8-View
MT5G010100anaphase-promoting complex subunit 11 RING-H2 finger proteinchr5+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G16950No description available.scaffold_2-View
PPE_005G11290No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT14G08770No description available.Chr14-View
PT02G16190No description available.Chr02-View
PT01G10100No description available.Chr01+View
PT03G13090No description available.Chr03-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30174G03170No description available.30174-View
RC30190G04200No description available.30190-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL08G081370RING-H2 finger protein (AHRD V1 *-*- Q30D22_PONTR)%3B contains Interpro domain(s) IPR011016 Zinc finger%2C RING-CH-typech08-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G029050RING-H2 finger protein (AHRD V1 *-*- Q30D22_PONTR); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr08+View
ST08G009790RING finger protein (AHRD V1 *-*- C5FG83_ARTOC); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-typechr08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0001G35280No description available.scaffold_1+View
TC0003G27890No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP2G00850similar to AT1G63840|zinc finger (C3HC4-type RING finger) family proteinch2-1+View
TP7G00550similar to AT5G41400|zinc finger (C3HC4-type RING finger) family proteinch7-1+View


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Gene id
Species
Description
Chromosome
Strand