Anchorpoints

Gene id
AT1G26770
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G03090member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A15 expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2-View
AT3G29030expansin A5 (EXPA5); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2184 Blast hits to 2181 proteins in 162 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 43; Plants - 2080; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A53-View
AT1G69530expansin A1 Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2216 Blast hits to 2212 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).1+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G08530No description available.scaffold_5-View
AL1G26840No description available.scaffold_1-View
AL2G17780No description available.scaffold_2+View

Amborella trichopoda

Gene id Description Chromosome Strand Multiplicon
ATR_00010G05010No description available.scaffold00010-View
ATR_00110G00620No description available.scaffold00110-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G19860No description available.A02+View
BR07G26310No description available.A07+View
BR02G30420No description available.A02+View
BR06G34660No description available.A06+View
BR09G30110No description available.A09+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G02370No description available.Bvchr6.sca028+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL04G11960No description available.Chr4+View
CL05G25140No description available.Chr5+View
CL09G18620No description available.Chr9+View
CL06G16680No description available.Chr6+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00051G00410No description available.CM3.5_scaffold00051-View
CM00001G00820No description available.CM3.5_scaffold00001-View
CM00030G01030No description available.CM3.5_scaffold00030-View
CM00016G04340No description available.CM3.5_scaffold00016-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G00460No description available.supercontig_1-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G23290No description available.scaffold_1-View
CRU_005G01780No description available.scaffold_5-View
CRU_002G15220No description available.scaffold_2+View
CRU_005G07030No description available.scaffold_5-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00015G01880No description available.scaffold00015-View
CS00003G04480No description available.scaffold00003-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0007G19230No description available.scaffold_7+View
EG0002G26460No description available.scaffold_2+View
EG0009G16370No description available.scaffold_9-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV0G05340Expansin-A1 (AtEXPA1), Precursor (putative)scf0513158+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM20G04490No description available.Gm20+View
GM06G20970No description available.Gm06-View
GM05G00950No description available.Gm05+View
GM18G49570No description available.Gm18-View
GM09G37090No description available.Gm09+View
GM17G10950No description available.Gm17-View
GM01G06030No description available.Gm01-View
GM02G12140No description available.Gm02-View
GM07G35620No description available.Gm07-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G32490No description available.Chr09-View
GR06G01510No description available.Chr06+View
GR13G08690No description available.Chr13-View
GR05G14220No description available.Chr05-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD06G015810No description available.6-View
MD17G004270No description available.17-View
MD09G003810No description available.9-View
MD13G004560No description available.13+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11581G01640No description available.scaffold11581-View
ME12794G02260No description available.scaffold12794-View
ME08359G02210No description available.scaffold08359+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G041700expansin A10chr5-View
MT4G081950expansin-A1-like proteinchr4-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G31480Expansin-A31 expansin precursor, putative, expressed3+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G20000No description available.scaffold_5-View
PPE_003G24480No description available.scaffold_3+View
PPE_001G28820No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G08830No description available.Chr08-View
PT17G08530No description available.Chr17-View
PT10G16720No description available.Chr10+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29813G00610No description available.29813-View
RC30138G02270No description available.30138+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G088100Expansin (AHRD V1 ***- Q9ZP31_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch02-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST05G010040Expansin (AHRD V1 ***- Q84UK5_PRUPE); contains Interpro domain(s) IPR002963 Expansinchr05-View
ST02G034760Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR002963 Expansinchr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G34240No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G22030similar to AT1G26770|ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)ch1-1-View
TP2G14080similar to AT2G03090|ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)ch2-4-View
TP5G24650similar to AT1G69530|ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)ch5-6+View
TP2G17660similar to AT3G29030|EXPA5 (EXPANSIN A5)ch2-4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G02400name=GSVIVG01011437001;chr14-View
VV17G03550name=GSVIVG01007987001;chr17-View


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Gene id
Species
Description
Chromosome
Strand