PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 28.1.1.1
Description: DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_8	30	51	1.92508e-30
Arabidopsis thaliana	1	17	CH_ath_7	30	44	2.28783e-33
Arabidopsis thaliana	2	17	CH_ath_34	26	77	5.19611e-18
Arabidopsis thaliana	2	17	CH_ath_204	7	8	0.00000174312
Arabidopsis thaliana	2	17	CH_ath_55	23	70	0.00000000000000293963
Arabidopsis thaliana	3	17	CH_ath_20	27	58	2.3404e-23
Arabidopsis thaliana	4	17	CH_ath_28	27	77	2.47542e-19
Arabidopsis thaliana	4	17	CH_ath_19	24	41	1.26234e-23
Arabidopsis thaliana	4	17	CH_ath_29	27	77	2.47542e-19
Arabidopsis thaliana	4	17	CH_ath_17	30	74	4.5389e-24
Arabidopsis thaliana	4	17	CH_ath_15	30	73	2.76448e-24
Arabidopsis thaliana	5	17	CH_ath_18	30	76	1.19117e-23
Arabidopsis thaliana	5	17	CH_ath_16	30	74	4.5389e-24
Arabidopsis thaliana	5	17	CH_ath_11	30	59	8.20547e-28
Arabidopsis thaliana	5	17	CH_ath_22	29	80	1.7385e-21
Arabidopsis thaliana	1	18	CH_ath_2	116	285	4.78183e-104
Arabidopsis thaliana	1	19	CH_ath_6	30	51	1.92508e-30
Arabidopsis thaliana	1	19	CH_ath_5	30	44	2.28783e-33
Arabidopsis thaliana	2	19	CH_ath_34	23	70	0.00000000000000293963
Arabidopsis thaliana	2	19	CH_ath_63	7	8	0.00000174312
Arabidopsis thaliana	2	19	CH_ath_21	26	77	5.19611e-18
Arabidopsis thaliana	3	19	CH_ath_13	27	58	2.3404e-23
Arabidopsis thaliana	4	19	CH_ath_10	30	74	4.5389e-24
Arabidopsis thaliana	4	19	CH_ath_17	27	77	2.47542e-19
Arabidopsis thaliana	4	19	CH_ath_8	30	73	2.76448e-24
Arabidopsis thaliana	4	19	CH_ath_18	27	77	2.47542e-19
Arabidopsis thaliana	4	19	CH_ath_12	24	41	1.26234e-23
Arabidopsis thaliana	5	19	CH_ath_11	30	76	1.19117e-23
Arabidopsis thaliana	5	19	CH_ath_14	29	80	1.7385e-21
Arabidopsis thaliana	5	19	CH_ath_9	30	74	4.5389e-24
Arabidopsis thaliana	5	19	CH_ath_7	30	59	8.20547e-28
Arabidopsis thaliana	1	20	CH_ath_2	116	285	4.78183e-104

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V