Functional clusters
Information
- Type
- GO term
- Identifier
- GO:1901605
- Description
- alpha-amino acid metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 1 | 5 | CH_ath_122 | 11 | 53 | 0.000243033 |
Arabidopsis thaliana | 1 | 6 | CH_ath_128 | 11 | 53 | 0.000295558 |
Lotus japonicus | chr1 | 1 | CH_lja_55 | 4 | 4 | 0.00000827588 |
Lotus japonicus | chr1 | 7 | CH_lja_3 | 4 | 4 | 0.00000261413 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000162 | tryptophan biosynthetic process | 1 |
GO:0006527 | arginine catabolic process | 1 |
GO:0006529 | asparagine biosynthetic process | 4 |
GO:0006535 | cysteine biosynthetic process from serine | 12 |
GO:0006536 | glutamate metabolic process | 2 |
GO:0006540 | glutamate decarboxylation to succinate | 2 |
GO:0006541 | glutamine metabolic process | 3 |
GO:0006542 | glutamine biosynthetic process | 8 |
GO:0006552 | leucine catabolic process | 1 |
GO:0006559 | L-phenylalanine catabolic process | 26 |
GO:0006560 | proline metabolic process | 2 |
GO:0006562 | proline catabolic process | 3 |
GO:0006567 | threonine catabolic process | 2 |
GO:0006568 | tryptophan metabolic process | 1 |
GO:0006569 | tryptophan catabolic process | 20 |
GO:0006571 | tyrosine biosynthetic process | 9 |
GO:0006572 | tyrosine catabolic process | 4 |
GO:0006574 | valine catabolic process | 3 |
GO:0006591 | ornithine metabolic process | 12 |
GO:0006760 | folic acid-containing compound metabolic process | 6 |
GO:0008612 | peptidyl-lysine modification to hypusine | 3 |
GO:0009067 | aspartate family amino acid biosynthetic process | 1 |
GO:0009098 | leucine biosynthetic process | 1 |
GO:0019281 | L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine | 1 |
GO:0019447 | D-cysteine catabolic process | 1 |
GO:0019450 | L-cysteine catabolic process to pyruvate | 6 |
GO:0019464 | glycine decarboxylation via glycine cleavage system | 3 |
GO:0019509 | L-methionine salvage from methylthioadenosine | 14 |
GO:0033387 | putrescine biosynthetic process from ornithine | 8 |
GO:0033388 | putrescine biosynthetic process from arginine | 2 |
GO:0033506 | glucosinolate biosynthetic process from homomethionine | 4 |
GO:0042450 | arginine biosynthetic process via ornithine | 1 |
GO:0046900 | tetrahydrofolylpolyglutamate metabolic process | 6 |
GO:0046901 | tetrahydrofolylpolyglutamate biosynthetic process | 4 |
GO:0071266 | 'de novo' L-methionine biosynthetic process | 9 |
GO:1901607 | alpha-amino acid biosynthetic process | 11 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |