PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

No results found

GO term	Description	Number of clusters
GO:0009793	embryo development ending in seed dormancy	11
GO:0009960	endosperm development	70
GO:0010068	protoderm histogenesis	2
GO:0010071	root meristem specification	2
GO:0010072	primary shoot apical meristem specification	4
GO:0010162	seed dormancy process	1
GO:0010214	seed coat development	1
GO:0010231	maintenance of seed dormancy	6
GO:0010431	seed maturation	22
GO:0048700	acquisition of desiccation tolerance in seed	4
GO:0080001	mucilage extrusion from seed coat	6
GO:0080112	seed growth	1
GO:0080113	regulation of seed growth	2
GO:2000014	regulation of endosperm development	2
GO:2000693	positive regulation of seed maturation	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V