PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG6	4	CH_fve_25	10	134	0.000000111328
Malus domestica	9	3	CH_mdo_21	11	46	0.0000000000211097
Malus domestica	9	6	CH_mdo_10	11	46	0.0000000000211097
Theobroma cacao	scaffold_1	1	CH_tca_293	6	34	0.000662095
Theobroma cacao	scaffold_1	4	CH_tca_58	11	159	0.0000251643

GO term	Description	Number of clusters
GO:0006073	cellular glucan metabolic process	2
GO:0006075	(1->3)-beta-D-glucan biosynthetic process	36
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009250	glucan biosynthetic process	6
GO:0010246	rhamnogalacturonan I biosynthetic process	4
GO:0010411	xyloglucan metabolic process	8
GO:0030244	cellulose biosynthetic process	2
GO:0030245	cellulose catabolic process	3
GO:0032951	regulation of beta-glucan biosynthetic process	6
GO:0032953	regulation of (1->3)-beta-D-glucan biosynthetic process	2
GO:0033692	cellular polysaccharide biosynthetic process	1
GO:0045226	extracellular polysaccharide biosynthetic process	2
GO:0051274	beta-glucan biosynthetic process	2
GO:0052541	plant-type cell wall cellulose metabolic process	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V