PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG7	5	CH_fve_76	11	200	0.000947298
Fragaria vesca	LG7	6	CH_fve_55	14	200	0.00000211914

GO term	Description	Number of clusters
GO:0000076	DNA replication checkpoint	1
GO:0000077	DNA damage checkpoint	2
GO:0000086	G2/M transition of mitotic cell cycle	2
GO:0000212	meiotic spindle organization	2
GO:0000712	resolution of meiotic recombination intermediates	5
GO:0000910	cytokinesis	3
GO:0000911	cytokinesis by cell plate formation	6
GO:0007060	male meiosis chromosome segregation	8
GO:0007062	sister chromatid cohesion	2
GO:0007065	male meiosis sister chromatid cohesion	3
GO:0007067	mitosis	2
GO:0007076	mitotic chromosome condensation	4
GO:0007091	metaphase/anaphase transition of mitotic cell cycle	2
GO:0007094	mitotic spindle assembly checkpoint	6
GO:0007129	synapsis	2
GO:0010032	meiotic chromosome condensation	3
GO:0010235	guard mother cell cytokinesis	2
GO:0010564	regulation of cell cycle process	2
GO:0032877	positive regulation of DNA endoreduplication	2
GO:0042138	meiotic DNA double-strand break formation	2
GO:0045128	negative regulation of reciprocal meiotic recombination	4
GO:0045841	negative regulation of mitotic metaphase/anaphase transition	2
GO:0051225	spindle assembly	1
GO:0055047	generative cell mitosis	1
GO:0060236	regulation of mitotic spindle organization	2
GO:0090306	spindle assembly involved in meiosis	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V