PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr4.sca004	1	CH_bvu_215	3	3	0.00064005
Beta vulgaris	Bvchr4.sca004	7	CH_bvu_12	3	3	0.00053802
Populus trichocarpa	Chr05	3	CH_ptr_492	7	60	0.00035074
Vitis vinifera	chr5	6	CH_vvi_115	12	280	0.0000603475

GO term	Description	Number of clusters
GO:0002020	protease binding	9
GO:0008536	Ran GTPase binding	17
GO:0019901	protein kinase binding	1
GO:0031625	ubiquitin protein ligase binding	43
GO:0042826	histone deacetylase binding	2
GO:0043424	protein histidine kinase binding	18
GO:0051020	GTPase binding	1
GO:0070063	RNA polymerase binding	6
GO:0070182	DNA polymerase binding	6

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V