Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0019219
- Description
- regulation of nucleobase-containing compound metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Prunus persica | scaffold_7 | 5 | CH_ppe_98 | 28 | 137 | 0.000051662 |
Solanum tuberosum | chr10 | 4 | CH_stu_156 | 11 | 37 | 0.000529473 |
Theobroma cacao | scaffold_1 | 5 | CH_tca_86 | 28 | 175 | 0.000899704 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | 2 |
GO:0006282 | regulation of DNA repair | 5 |
GO:0006355 | regulation of transcription, DNA-dependent | 118 |
GO:0006357 | regulation of transcription from RNA polymerase II promoter | 4 |
GO:0031564 | transcription antitermination | 2 |
GO:0031935 | regulation of chromatin silencing | 6 |
GO:0032312 | regulation of ARF GTPase activity | 3 |
GO:0032313 | regulation of Rab GTPase activity | 3 |
GO:0032784 | regulation of DNA-dependent transcription, elongation | 11 |
GO:0032786 | positive regulation of DNA-dependent transcription, elongation | 1 |
GO:0032877 | positive regulation of DNA endoreduplication | 2 |
GO:0044030 | regulation of DNA methylation | 11 |
GO:0045014 | negative regulation of transcription by glucose | 2 |
GO:0045128 | negative regulation of reciprocal meiotic recombination | 4 |
GO:0045739 | positive regulation of DNA repair | 2 |
GO:0045892 | negative regulation of transcription, DNA-dependent | 2 |
GO:0045893 | positive regulation of transcription, DNA-dependent | 4 |
GO:0045910 | negative regulation of DNA recombination | 2 |
GO:0045980 | negative regulation of nucleotide metabolic process | 3 |
GO:0048024 | regulation of mRNA splicing, via spliceosome | 2 |
GO:0051090 | regulation of sequence-specific DNA binding transcription factor activity | 7 |
GO:0051254 | positive regulation of RNA metabolic process | 1 |
GO:0051973 | positive regulation of telomerase activity | 4 |
GO:0090296 | regulation of mitochondrial DNA replication | 3 |
GO:0090309 | positive regulation of methylation-dependent chromatin silencing | 8 |
GO:1900363 | regulation of mRNA polyadenylation | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |