PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: GO term
Identifier: GO:0016901
Description: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG6	3	CH_fve_418	2	2	0.000598784
Prunus persica	scaffold_5	1	CH_ppe_307	2	2	0.00043251
Prunus persica	scaffold_5	2	CH_ppe_389	2	2	0.00043251
Prunus persica	scaffold_5	3	CH_ppe_469	2	2	0.00043251
Ricinus communis	30147	1	CH_rco_194	2	2	0.000589188
Ricinus communis	30147	2	CH_rco_224	2	2	0.000589188
Ricinus communis	30147	3	CH_rco_287	2	2	0.000589188
Theobroma cacao	scaffold_3	1	CH_tca_271	2	2	0.000409026
Theobroma cacao	scaffold_3	2	CH_tca_327	2	2	0.000409026
Theobroma cacao	scaffold_3	3	CH_tca_394	2	2	0.000409026

GO term	Description	Number of clusters
GO:0004368	glycerol-3-phosphate dehydrogenase activity	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V