PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_59	1	CH_cpa_86	3	3	0.0000413544
Carica papaya	supercontig_59	2	CH_cpa_98	3	3	0.0000463169
Carica papaya	supercontig_59	3	CH_cpa_167	3	3	0.0000463169
Fragaria vesca	LG5	1	CH_fve_167	3	3	0.0000491523
Fragaria vesca	scf0513158	1	CH_fve_166	3	3	0.0000491523
Fragaria vesca	LG5	2	CH_fve_187	3	3	0.0000531376
Fragaria vesca	scf0513158	2	CH_fve_186	3	3	0.0000531376
Fragaria vesca	LG5	3	CH_fve_278	3	3	0.0000617429
Fragaria vesca	scf0513158	3	CH_fve_277	3	3	0.0000617429
Populus trichocarpa	Chr03	1	CH_ptr_250	4	11	0.0000445853
Populus trichocarpa	Chr03	2	CH_ptr_285	4	11	0.0000479435
Populus trichocarpa	Chr03	3	CH_ptr_389	4	11	0.0000591609
Prunus persica	scaffold_1	1	CH_ppe_135	4	4	0.000000102708
Prunus persica	scaffold_1	2	CH_ppe_154	4	4	0.000000113811
Prunus persica	scaffold_1	3	CH_ppe_185	4	4	0.000000113811
Ricinus communis	29747	1	CH_rco_130	3	3	0.0000528551
Ricinus communis	29747	2	CH_rco_146	3	3	0.0000587279
Ricinus communis	29747	3	CH_rco_190	3	3	0.0000650202
Vitis vinifera	chr17	1	CH_vvi_217	3	3	0.0000605848
Vitis vinifera	chr17	2	CH_vvi_242	3	3	0.0000659305
Vitis vinifera	chr1	3	CH_vvi_331	3	3	0.0000715817
Vitis vinifera	chr17	3	CH_vvi_332	3	3	0.0000715817
Zea mays	1	1	CH_zma_158	3	3	0.000099535

GO term	Description	Number of clusters
GO:0003827	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	2
GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9
GO:0050511	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V