PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

No results found

GO term	Description	Number of clusters
GO:0002752	cell surface pattern recognition receptor signaling pathway	8
GO:0009616	virus induced gene silencing	5
GO:0009626	plant-type hypersensitive response	18
GO:0009814	defense response, incompatible interaction	3
GO:0009816	defense response to bacterium, incompatible interaction	20
GO:0009817	defense response to fungus, incompatible interaction	5
GO:0009818	defense response to protozoan, incompatible interaction	1
GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	8
GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	1
GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	1
GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2
GO:0010113	negative regulation of systemic acquired resistance	1
GO:0010204	defense response signaling pathway, resistance gene-independent	2
GO:0016068	type I hypersensitivity	2
GO:0034052	positive regulation of plant-type hypersensitive response	2
GO:0045087	innate immune response	48
GO:0052033	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	10
GO:0080185	effector dependent induction by symbiont of host immune response	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V