PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	scf0513160	1	CH_fve_108	3	3	0.00000118323
Prunus persica	scaffold_8	1	CH_ppe_261	4	58	0.0000990054
Prunus persica	scaffold_8	2	CH_ppe_360	4	58	0.000335518
Prunus persica	scaffold_8	3	CH_ppe_438	4	58	0.000335518
Ricinus communis	30170	3	CH_rco_49	5	7	0.0000000000293036
Solanum tuberosum	chr03	1	CH_stu_115	5	7	0.00000000000496691
Solanum tuberosum	chr03	2	CH_stu_145	5	7	0.0000000000256373
Solanum tuberosum	chr03	3	CH_stu_112	6	7	0.00000000000000511098

GO term	Description	Number of clusters
GO:0006597	spermine biosynthetic process	10
GO:0009446	putrescine biosynthetic process	1
GO:0033387	putrescine biosynthetic process from ornithine	8
GO:0033388	putrescine biosynthetic process from arginine	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V