PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	5	CH_ath_83	10	26	0.0000339351
Arabidopsis thaliana	5	6	CH_ath_87	10	26	0.0000342836
Medicago truncatula	chr1	2	CH_mtr_578	7	22	0.000255032
Medicago truncatula	chr2	2	CH_mtr_478	5	6	0.0000786014
Medicago truncatula	chr1	3	CH_mtr_721	7	22	0.000266903
Medicago truncatula	chr2	3	CH_mtr_603	5	6	0.0000812478
Populus trichocarpa	Chr14	2	CH_ptr_330	5	5	0.000131613
Populus trichocarpa	Chr15	2	CH_ptr_455	7	17	0.000859181
Populus trichocarpa	Chr14	3	CH_ptr_415	5	5	0.000133252
Populus trichocarpa	Chr15	3	CH_ptr_563	7	17	0.00087383

GO term	Description	Number of clusters
GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain	3
GO:0000323	lytic vacuole	2
GO:0000326	protein storage vacuole	12
GO:0005774	vacuolar membrane	13
GO:0005775	vacuolar lumen	6
GO:0009705	plant-type vacuole membrane	7
GO:0016471	vacuolar proton-transporting V-type ATPase complex	6
GO:0042807	central vacuole	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V