PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_19	1	CH_cpa_132	3	3	0.000260483
Carica papaya	supercontig_19	2	CH_cpa_216	3	3	0.000589056
Carica papaya	supercontig_19	3	CH_cpa_331	3	3	0.000677293
Zea mays	mitochondrial	1	CH_zma_96	6	79	0.00000527345

GO term	Description	Number of clusters
GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	8
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	11
GO:0005744	mitochondrial inner membrane presequence translocase complex	12
GO:0005746	mitochondrial respiratory chain	9
GO:0031305	integral to mitochondrial inner membrane	1
GO:0031314	extrinsic to mitochondrial inner membrane	20

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V