PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Lotus japonicus	chr6	1	CH_lja_103	4	5	0.000479492
Lotus japonicus	chr6	2	CH_lja_155	4	5	0.000570652
Lotus japonicus	chr6	3	CH_lja_215	4	5	0.00096541
Medicago truncatula	chr4	3	CH_mtr_778	8	41	0.000415631
Medicago truncatula	chr4	6	CH_mtr_205	16	221	0.0000638131

GO term	Description	Number of clusters
GO:0003735	structural constituent of ribosome	27
GO:0005199	structural constituent of cell wall	48
GO:0005200	structural constituent of cytoskeleton	5
GO:0005201	extracellular matrix structural constituent	4
GO:0017056	structural constituent of nuclear pore	4
GO:0030527	structural constituent of chromatin	9

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V