PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr3.sca010	1	CH_bvu_211	2	2	0.000579374
Citrullus lanatus	Chr2	1	CH_cla_167	2	2	0.000255341
Citrullus lanatus	Chr2	2	CH_cla_200	2	2	0.000255341
Citrullus lanatus	Chr2	3	CH_cla_260	2	2	0.000255341
Fragaria vesca	LG6	1	CH_fve_178	2	2	0.0000598784
Fragaria vesca	LG6	2	CH_fve_207	2	2	0.0000598784
Fragaria vesca	LG6	3	CH_fve_273	2	2	0.0000598784
Prunus persica	scaffold_6	1	CH_ppe_317	2	3	0.000648727
Prunus persica	scaffold_6	2	CH_ppe_405	2	3	0.000648727
Prunus persica	scaffold_6	3	CH_ppe_504	2	3	0.000648727

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V