| Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -593 |
| Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -598 |
| Matrix_24 | POC1 | Not available | Upstream | -598 |
| Matrix_264 | ATAREB1 | Not available | Upstream | -594 |
| Matrix_356 | PRR5 | Not available | Upstream | -716 |
| Matrix_403 | BZR1 | Not available | Upstream | -596 |
| Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -593 |
| Matrix_7 | PIF4 | Not available | Upstream | -594 |
| Matrix_77 | PRR5 | Not available | Upstream | -596 |
| Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -552 |
| Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Intron | 3253 |
| Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -741 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -741 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -24 |
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