Matrix_101 | ERF5 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_104 | PI | Not available | Downstream | 1703 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -203 |
| | | Upstream | -204 |
Matrix_111 | ABF3 | Not available | Downstream | 1701 |
Matrix_113 | ABI5 | Not available | Downstream | 1701 |
Matrix_119 | RRTF1 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_122 | ABF1;AREB2 | Not available | Downstream | 1702 |
Matrix_134 | ABF1 | Not available | Downstream | 1701 |
Matrix_138 | RRTF1 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_146 | ORA47 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -202 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -206 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -203 |
| | | Upstream | -204 |
Matrix_173 | ZAP1 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -416 |
Matrix_190 | ATERF1 | Not available | Upstream | -202 |
| | | Upstream | -203 |
| | | Upstream | -204 |
Matrix_192 | FHY3/FAR1 | Not available | Downstream | 1701 |
Matrix_21 | HSFC1 | Not available | Downstream | 1366 |
Matrix_234 | RAP2.3 | Not available | Upstream | -202 |
| | | Upstream | -203 |
| | | Upstream | -204 |
Matrix_252 | RAP2.6 | Not available | Upstream | -202 |
| | | Upstream | -203 |
| | | Upstream | -204 |
Matrix_261 | ATERF-1 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_264 | ATAREB1 | Not available | Downstream | 1702 |
Matrix_272 | DEAR4 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_288 | RAP2.3 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_290 | AP2 | Not available | Upstream | -151 |
| | | Upstream | -152 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Downstream | 1959 |
Matrix_343 | AT2G33710 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_359 | FLC | Not available | Downstream | 1704 |
Matrix_363 | RAP2.3 | Not available | Upstream | -201 |
| | | Upstream | -202 |
Matrix_378 | ATERF1 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_403 | BZR1 | Not available | Downstream | 1704 |
Matrix_443 | AGL15 | Not available | Downstream | 1704 |
Matrix_45 | DRN | Not available | Upstream | -202 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -206 |
Matrix_467 | RAV1 | Not available | Downstream | 1959 |
Matrix_473 | RRTF1 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_477 | RAV1 | Not available | Downstream | 1959 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Matrix_517 | ERF12 | Not available | Upstream | -205 |
| | | Upstream | -206 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -203 |
| | | Upstream | -204 |
Matrix_91 | CRF3 | Not available | Upstream | -202 |
| | | Upstream | -203 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -381 |
Motif_115 | HSEs binding site motif | Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? | Downstream | 1366 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -82 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -197 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Downstream | 1431 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -235 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 1700 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -118 |
| | | Upstream | -190 |
| | | Upstream | -210 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -145 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1700 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Downstream | 1701 |
| | | Downstream | 1700 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -118 |
| | | Upstream | -166 |
| | | Upstream | -190 |
| | | Upstream | -210 |
Motif_244 | ABRE-like binding site motif | Not available | Downstream | 1700 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Downstream | 1701 |
| | | Downstream | 1700 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -362 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -390 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -589 |
| | | Upstream | -761 |
| | | Upstream | -1982 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 1430 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -118 |
| | | Upstream | -190 |
| | | Upstream | -210 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 1700 |
Motif_351 | GARE1OSREP1 | Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -165 |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | Intron | 471 |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Downstream | 1391 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -135 |
Motif_419 | MYB4 binding site motif | Not available | Downstream | 1391 |
| | | Upstream | -362 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -145 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Downstream | 1689 |
| | | Intron | 409 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -362 |
Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | Upstream | -165 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Intron | 641 |
| | | Intron | 369 |
| | | Upstream | -1982 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1390 |
| | | Upstream | -135 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -382 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Downstream | 1699 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1485 |
| | | Intron | 410 |
| | | Upstream | -81 |
| | | Upstream | -410 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -362 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1390 |
| | | Upstream | -135 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 1485 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Downstream | 1693 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Downstream | 1699 |