View conserved binding sites


Gene
VV07G05650
Description
name=GSVIVG01022145001;
Alias
GSVIVT01022145001;GSVIVG01022145001;GSVIVG01022145001
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-202
Upstream-203
Matrix_104PINot availableDownstream1703
Matrix_110ATABI4;AT3G57600Not availableUpstream-203
Upstream-204
Matrix_111ABF3Not availableDownstream1701
Matrix_113ABI5Not availableDownstream1701
Matrix_119RRTF1Not availableUpstream-201
Upstream-202
Matrix_122ABF1;AREB2Not availableDownstream1702
Matrix_134ABF1Not availableDownstream1701
Matrix_138RRTF1Not availableUpstream-201
Upstream-202
Matrix_146ORA47Not availableUpstream-202
Upstream-203
Matrix_147ERF3;AT1G80580Not availableUpstream-202
Upstream-203
Upstream-205
Upstream-206
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-203
Upstream-204
Matrix_173ZAP1Not availableUpstream-201
Upstream-202
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-416
Matrix_190ATERF1Not availableUpstream-202
Upstream-203
Upstream-204
Matrix_192FHY3/FAR1Not availableDownstream1701
Matrix_21HSFC1Not availableDownstream1366
Matrix_234RAP2.3Not availableUpstream-202
Upstream-203
Upstream-204
Matrix_252RAP2.6Not availableUpstream-202
Upstream-203
Upstream-204
Matrix_261ATERF-1Not availableUpstream-202
Upstream-203
Matrix_264ATAREB1Not availableDownstream1702
Matrix_272DEAR4Not availableUpstream-202
Upstream-203
Matrix_288RAP2.3Not availableUpstream-201
Upstream-202
Matrix_290AP2Not availableUpstream-151
Upstream-152
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-201
Upstream-202
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsDownstream1959
Matrix_343AT2G33710Not availableUpstream-202
Upstream-203
Matrix_355ERF10;ERF11Not availableUpstream-201
Upstream-202
Matrix_359FLCNot availableDownstream1704
Matrix_363RAP2.3Not availableUpstream-201
Upstream-202
Matrix_378ATERF1Not availableUpstream-202
Upstream-203
Matrix_403BZR1Not availableDownstream1704
Matrix_443AGL15Not availableDownstream1704
Matrix_45DRNNot availableUpstream-202
Upstream-203
Upstream-205
Upstream-206
Matrix_467RAV1Not availableDownstream1959
Matrix_473RRTF1Not availableUpstream-202
Upstream-203
Matrix_477RAV1Not availableDownstream1959
Matrix_493AT1G22985;AT1G71130Not availableUpstream-202
Upstream-203
Matrix_517ERF12Not availableUpstream-205
Upstream-206
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-203
Upstream-204
Matrix_91CRF3Not availableUpstream-202
Upstream-203
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-381
Motif_115HSEs binding site motifArabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?Downstream1366
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-82
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-197
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneDownstream1431
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-235
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream1700
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-118
Upstream-190
Upstream-210
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-145
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1700
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREDownstream1701
Downstream1700
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-118
Upstream-166
Upstream-190
Upstream-210
Motif_244ABRE-like binding site motifNot availableDownstream1700
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemDownstream1701
Downstream1700
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-362
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-390
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-589
Upstream-761
Upstream-1982
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream1430
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-118
Upstream-190
Upstream-210
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream1700
Motif_351GARE1OSREP1Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-165
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionIntron471
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterDownstream1391
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-135
Motif_419MYB4 binding site motifNot availableDownstream1391
Upstream-362
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-145
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream1689
Intron409
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-362
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-165
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesIntron641
Intron369
Upstream-1982
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1390
Upstream-135
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-382
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisDownstream1699
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1485
Intron410
Upstream-81
Upstream-410
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-362
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1390
Upstream-135
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1485
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisDownstream1693
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREDownstream1699