Matrix_104 | PI | Not available | Upstream | -735 |
| | | Upstream | -808 |
Matrix_109 | GBF3 | Not available | Upstream | -565 |
| | | Upstream | -737 |
| | | Upstream | -808 |
Matrix_113 | ABI5 | Not available | Upstream | -737 |
| | | Upstream | -808 |
| | | Upstream | -810 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -562 |
| | | Upstream | -563 |
| | | Upstream | -732 |
| | | Upstream | -733 |
| | | Upstream | -765 |
| | | Upstream | -805 |
Matrix_120 | BEE2 | Not available | Upstream | -566 |
| | | Upstream | -736 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -736 |
| | | Upstream | -809 |
Matrix_129 | ABF1 | Not available | Upstream | -566 |
| | | Upstream | -736 |
| | | Upstream | -809 |
Matrix_134 | ABF1 | Not available | Upstream | -737 |
| | | Upstream | -809 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -566 |
| | | Upstream | -737 |
| | | Upstream | -809 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -567 |
| | | Upstream | -737 |
| | | Upstream | -810 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -764 |
| | | Upstream | -805 |
Matrix_156 | POC1 | Not available | Upstream | -565 |
| | | Upstream | -567 |
| | | Upstream | -735 |
| | | Upstream | -737 |
| | | Upstream | -808 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -566 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -737 |
| | | Upstream | -806 |
| | | Upstream | -810 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -733 |
| | | Upstream | -806 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -566 |
| | | Upstream | -736 |
| | | Upstream | -809 |
Matrix_214 | AP1 | Not available | Upstream | -383 |
| | | Upstream | -807 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -737 |
| | | Upstream | -806 |
Matrix_233 | MYC3 | Not available | Upstream | -567 |
| | | Upstream | -737 |
Matrix_24 | POC1 | Not available | Upstream | -764 |
Matrix_247 | PIF3 | Not available | Upstream | -566 |
| | | Upstream | -736 |
| | | Upstream | -768 |
| | | Upstream | -809 |
Matrix_264 | ATAREB1 | Not available | Upstream | -736 |
| | | Upstream | -809 |
Matrix_296 | GBF2 | Not available | Upstream | -566 |
| | | Upstream | -737 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -566 |
| | | Upstream | -737 |
| | | Upstream | -809 |
| | | Upstream | -810 |
Matrix_301 | PIL5 | Not available | Upstream | -561 |
| | | Upstream | -737 |
| | | Upstream | -810 |
Matrix_331 | GBF1 | Not available | Upstream | -737 |
| | | Upstream | -808 |
Matrix_332 | SPT;ALC | Not available | Upstream | -566 |
| | | Upstream | -567 |
| | | Upstream | -736 |
| | | Upstream | -737 |
| | | Upstream | -809 |
Matrix_338 | AP2 | Not available | Upstream | -733 |
| | | Upstream | -806 |
Matrix_345 | POC1 | Not available | Upstream | -562 |
| | | Upstream | -563 |
| | | Upstream | -732 |
| | | Upstream | -733 |
| | | Upstream | -764 |
| | | Upstream | -765 |
| | | Upstream | -805 |
Matrix_356 | PRR5 | Not available | Upstream | -729 |
| | | Upstream | -802 |
| | | Upstream | -806 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -78 |
Matrix_389 | ILR3 | Not available | Upstream | -736 |
| | | Upstream | -809 |
Matrix_403 | BZR1 | Not available | Upstream | -766 |
| | | Upstream | -807 |
Matrix_42 | AT2G45680 | Not available | Upstream | -773 |
| | | Upstream | -796 |
Matrix_443 | AGL15 | Not available | Upstream | -734 |
| | | Upstream | -807 |
Matrix_488 | ABF1 | Not available | Upstream | -558 |
| | | Upstream | -735 |
| | | Upstream | -760 |
| | | Upstream | -801 |
Matrix_516 | ANAC038;ANAC079 | Not available | Upstream | -619 |
Matrix_53 | MYC3 | Not available | Upstream | -564 |
Matrix_55 | PIF3 | Not available | Upstream | -565 |
| | | Upstream | -735 |
| | | Upstream | -808 |
Matrix_7 | PIF4 | Not available | Upstream | -566 |
| | | Upstream | -738 |
| | | Upstream | -809 |
Matrix_77 | PRR5 | Not available | Upstream | -565 |
| | | Upstream | -734 |
| | | Upstream | -735 |
| | | Upstream | -808 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -691 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -567 |
| | | Upstream | -737 |
| | | Upstream | -810 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -736 |
| | | Upstream | -808 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -566 |
| | | Upstream | -567 |
| | | Upstream | -736 |
| | | Upstream | -737 |
| | | Upstream | -809 |
| | | Upstream | -810 |
| | | Upstream | -1979 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -737 |
| | | Upstream | -808 |
| | | Upstream | -810 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -737 |
| | | Upstream | -808 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -567 |
| | | Upstream | -737 |
| | | Upstream | -810 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -566 |
| | | Upstream | -567 |
| | | Upstream | -736 |
| | | Upstream | -737 |
| | | Upstream | -809 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -808 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -738 |
| | | Upstream | -808 |
| | | Upstream | -811 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -737 |
| | | Upstream | -808 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -811 |